PPIRE18985
Target Protein Information
| Protein_Name | None |
|---|---|
| Protein_Sequence | AVFIVIFRYHNTVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINIIGMQMVPKINPSKAFVGSS |
| Organism_Source | White spot syndrome virus |
| Functional_Classification | viral envelope proteins |
| Cellular_Localization | Extracellular |
| Gene_Names | VP28 |
| UniProt_ID | A0A140F1M8 |
| Protein-Protein Interaction Networks | |
Peptide Basic Information
| Peptide_Name | pep28 |
|---|---|
| Peptide_Sequence | TFQAFDLSPFPS |
| Peptide_Length | 12 |
| Peptide_SMILES | CC(C)C[C@H](NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](C)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@@H](N)[C@@H](C)O)C(=O)N[C@@H](CO)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CO)C(=O)O |
| Chemical_Modification | None |
| Cyclization_Method | None |
| Linear/Cyclic | Linear |
| N-terminal_Modification | Acetyl |
| C-terminal_Modification | GGGSK-biotin |
| Amino_Acid_Distribution | |
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Peptide Physicochemical
| Molecular_Weight | 1356.50 |
|---|---|
| Aliphatic_Index | 40.83333 |
| Aromaticity | 0.25000 |
| Average_Rotatable_Bonds | 3.08333 |
| Charge_at_pH_7 | -1.00157 |
| Isoelectric_Point | 3.74999 |
|---|---|
| Hydrogen_Bond_Acceptors | 18 |
| Hydrogen_Bond_Donors | 16 |
| Topological_Polar_Surface_Area | 506.92000 |
| X_logP_energy | -4.35680 |
Interaction Information
| Affinity | KD=810 nM |
|---|---|
| Affinity_Assay | ELISA |
| PDB_ID | None |
| Type | Affinity ligand |
| Structure | |
Reference Information
| Document_Type | Research Articles |
|---|---|
| Title | Lateral flow assay for rapid detection of white spot syndrome virus (WSSV) using a phage-displayed peptide as bio-recognition probe |
| Release_Year | 2017 |
| PMID | 28349164 |
| DOI | 10.1007/s00253-017-8232-6 |