PPIST11196

Protein Information
Protein_Chain A[auth L]; D[auth M]/B[auth H]; E[auth I]
Protein_Sequence ALVMTQTPSSVSAAVGGTVTINCQASEDIQRNLAWYQQKPGQRPKFLIYGVSNLESGVPSRFKGSGSGTEYTLTISDLECDDAATYYCQSALYTSATDICAFGGGTEVVVKGDPVAPTVLIFPPAADQVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTQYNSHKEYTCKVTQGTTSVVQSFNRGDC/QEQLVESGGGLVKPGGTLTLTCTASGFSFSSGFFMCWVRQAPGKGLEWIGCIYGGSNDNTYYANWAKGRFTISKTSSTTVTLQMTSRTAADTATYFCARDAGTSGYIAYNLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSSQPVTCNVAHPATNTKVDKTVAPS
Peptide Information
Peptide_Chain C[auth P]; F[auth Q]
Peptide_Sequence NNTRKSIHIGPGRAFYTTGEIIG
Peptide_Length 23
Non-standard residues No
Interaction Information
PDB_ID 5V6L
Method X-RAY DIFFRACTION
Resolution 2.55 angstrom
Structure
Protein-peptide residue interaction
Residues
Acidic
Polar
Basic
Aliphatic
Aromatic
Interactions
HBond
WaterBridge
Hydrophobic
SaltBridge
PiStack
PiCation
Halogen
Metal
Interaction_xlsx Download interaction table (.xlsx)
Reference Information
Title Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.
Release_Year 2018
PMID 29343576
DOI 10.1128/JVI.01894-17