PPIRE01411

Target Protein Information
Protein_Name Polyubiquitin-B
Protein_Sequence MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Organism_Source Homo sapiens
Functional_Classification ubiquitin
Cellular_Localization Cytoplasm
Gene_Names UBB
UniProt_ID P0CG47
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name Npl4 NZF
Peptide_Sequence TSAMWACQHCTFMNQPGTGHCEMCSLPRT
Peptide_Length 29
Peptide_SMILES CSCC[C@H](NC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@@H](N)[C@@H](C)O)C(=O)N[C@@H](Cc1c[nH]c2ccccc12)C(=O)N[C@@H](C)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CS)C(=O)N[C@H](C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(N)=O)C(=O)N1CCC[C@H]1C(=O)NCC(=O)N[C@H](C(=O)NCC(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCSC)C(=O)N[C@@H](CS)C(=O)N[C@@H](CO)C(=O)N[C@@H](CC(C)C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)O)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O
Chemical_Modification None
Cyclization_Method None
Linear/Cyclic Linear
N-terminal_Modification Free
C-terminal_Modification Free
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 3229.72
Aliphatic_Index 20.34483
Aromaticity 0.06897
Average_Rotatable_Bonds 3.41379
Charge_at_pH_7 -0.06632
Isoelectric_Point 7.29081
Number_of_Hydrogen_Bond_Acceptors 50
Number_of_Hydrogen_Bond_Donors 48
Topological_Polar_Surface_Area 1283.54000
X_logP_energy -16.74713
Interaction Information
Affinity KD=126 uM
Affinity_Assay Surface plasmon resonance
PDB_ID 1Q5W
Type Affinity ligand
Structure
Reference Information
Document_Type Research Articles
Title Ubiquitin interactions of NZF zinc fingers.
Release_Year 2004
PMID 15029239
DOI 10.1038/sj.emboj.7600114