PPIRE10319
Target Protein Information
| Protein_Name | Peptidyl-prolyl cis-trans isomerase F, mitochondrial |
|---|---|
| Protein_Sequence | MLALRCGSRWLGLLSVPRSVPLRLPAARACSKGSGDPSSSSSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS |
| Organism_Source | Homo sapiens |
| Functional_Classification | peptidyl-prolyl cis-trans isomerase |
| Cellular_Localization | Mitochondrion |
| Gene_Names | PPIF |
| UniProt_ID | P30405 |
| Protein-Protein Interaction Networks | |
Peptide Basic Information
| Peptide_Name | cyclosporin A |
|---|---|
| Peptide_Sequence | XXXXXXXXXXX |
| Peptide_Length | 11 |
| Peptide_SMILES | NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)NCC(=O)O |
| Chemical_Modification | X=Bmt; X=Aba; X=Sar; X=Mle; X=Dal; X=Mva |
| Cyclization_Method | Main chain-main chain cyclization; X1<->X11; amide bond |
| Linear/Cyclic | Cyclic |
| N-terminal_Modification | None |
| C-terminal_Modification | None |
| Amino_Acid_Distribution | |
|
|
|
Peptide Physicochemical
| Molecular_Weight | 645.59 |
|---|---|
| Aliphatic_Index | 0.00000 |
| Aromaticity | 0.00000 |
| Average_Rotatable_Bonds | 1.90909 |
| Charge_at_pH_7 | -0.00202 |
| Isoelectric_Point | 6.10000 |
|---|---|
| Number_of_Hydrogen_Bond_Acceptors | 12 |
| Number_of_Hydrogen_Bond_Donors | 12 |
| Topological_Polar_Surface_Area | 354.32000 |
| X_logP_energy | -9.80830 |
Interaction Information
| Affinity | KD=13.4 nM |
|---|---|
| Affinity_Assay | not specified |
| PDB_ID | 2Z6W |
| Type | Inhibitor |
| Structure | |
Reference Information
| Document_Type | Research Articles |
|---|---|
| Title | Crystal structure of human cyclophilin D in complex with its inhibitor, cyclosporin A at 0.96-A resolution. |
| Release_Year | 2007 |
| PMID | 18076075 |
| DOI | 10.1002/prot.21855 |