PPIRE10404
Target Protein Information
| Protein_Name | Hepatoma-derived growth factor-related protein 3 |
|---|---|
| Protein_Sequence | MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSSEGGDAGNDTRNTTSDLQKTSEGT |
| Organism_Source | Homo sapiens |
| Functional_Classification | histone readers |
| Cellular_Localization | Nucleus |
| Gene_Names | HDGFL3 |
| UniProt_ID | Q9Y3E1 |
| Protein-Protein Interaction Networks | |
Peptide Basic Information
| Peptide_Name | H3K36me3 |
|---|---|
| Peptide_Sequence | PATGGVXKPHRY |
| Peptide_Length | 12 |
| Peptide_SMILES | CC(C)[C@H](NC(=O)CNC(=O)CNC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)[C@@H]1CCCN1)[C@@H](C)O)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1c[nH]cn1)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](Cc1ccc(O)cc1)C(=O)O |
| Chemical_Modification | X7=N6-trimethyllysine |
| Cyclization_Method | None |
| Linear/Cyclic | Linear |
| N-terminal_Modification | Free |
| C-terminal_Modification | Free |
| Amino_Acid_Distribution | |
|
|
|
Peptide Physicochemical
| Molecular_Weight | 1239.40 |
|---|---|
| Aliphatic_Index | 32.50000 |
| Aromaticity | 0.08333 |
| Average_Rotatable_Bonds | 3.00000 |
| Charge_at_pH_7 | 2.08774 |
| Isoelectric_Point | 10.45503 |
|---|---|
| Number_of_Hydrogen_Bond_Acceptors | 18 |
| Number_of_Hydrogen_Bond_Donors | 19 |
| Topological_Polar_Surface_Area | 517.70000 |
| X_logP_energy | -6.08073 |
Interaction Information
| Affinity | KD=1 mM |
|---|---|
| Affinity_Assay | Fluorescence Polarization |
| PDB_ID | None |
| Type | Affinity ligand |
| Structure | |
Reference Information
| Document_Type | Research Articles |
|---|---|
| Title | Structural and histone binding ability characterizations of human PWWP domains. |
| Release_Year | 2011 |
| PMID | 21720545 |
| DOI | 10.1371/journal.pone.0018919 |