PPIRE12196

Target Protein Information
Protein_Name Protein SAWADEE HOMEODOMAIN HOMOLOG 1
Protein_Sequence MAASDDSSHYFTEFTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEKLKHQSQPKSKTLPSPPLQIHDLSNPSSYASNASNATFVGNSTFVQTRKGKASDLADLAFEAKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVKTSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLVRYELDNTEESLGLERICRRPEE
Organism_Source Arabidopsis thaliana
Functional_Classification histone reader
Cellular_Localization Nucleus
Gene_Names SHH1
UniProt_ID Q9XI47
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name H3(1-15)unmodified
Peptide_Sequence ARTKQTARKSTGGKA
Peptide_Length 15
Peptide_SMILES C[C@H](N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)NCC(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](C)C(=O)O)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O
Chemical_Modification None
Cyclization_Method None
Linear/Cyclic Linear
N-terminal_Modification Free
C-terminal_Modification Free
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 1560.78
Aliphatic_Index 20.00000
Aromaticity 0.00000
Average_Rotatable_Bonds 3.73333
Charge_at_pH_7 4.99709
Isoelectric_Point 12.54608
Number_of_Hydrogen_Bond_Acceptors 26
Number_of_Hydrogen_Bond_Donors 30
Topological_Polar_Surface_Area 796.59000
X_logP_energy -13.17826
Interaction Information
Affinity KD=34.8 uM
Affinity_Assay Isothermal titration calorimetry
PDB_ID None
Type Affinity ligand
Structure
Reference Information
Document_Type Research Articles
Title Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1.
Release_Year 2013
PMID 23636332
DOI 10.1038/nature12178