PPIRE12618

Target Protein Information
Protein_Name Peroxisomal membrane protein PEX13
Protein_Sequence MSSTAVPRPKPWETSASLEEPQRNAQSLSAMMTSNQQDSRPTEESNNSNSASESAPEVLPRPAALNSSGTYGESNTIPGIYGNSNYGIPYDNNPYSMNSIYGNSIGRYGYGGSYYGNNYGSFYGGGYGAGAGYGMNNGSGLGESTKATFQLIESLIGAVTGFAQMLESTYMATHNSFFTMISVAEQFGNLKEMLGSFFGIFAIMKFLKKILYRATKGRLGIPPKNFAESEGSKNKLIEDFQKFNDSGTINSNEKATRRKISWKPLLFFLMAVFGFPYLLNKFITKLQTSGTIRASQGNGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRKKIEHVDDETRTH
Organism_Source Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Functional_Classification adaptor proteins
Cellular_Localization Cytoplasm
Gene_Names PEX13
UniProt_ID P80667
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name Pex5p peptide
Peptide_Sequence EQEQQPWTDQFEKLEKE
Peptide_Length 17
Peptide_SMILES CC(C)C[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](Cc1ccccc1)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CC(=O)O)NC(=O)[C@@H](NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](N)CCC(=O)O)[C@@H](C)O)C(=O)N[C@@H](CCC(=O)O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(=O)O)C(=O)O
Chemical_Modification None
Cyclization_Method None
Linear/Cyclic Linear
N-terminal_Modification Free
C-terminal_Modification Free
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 2192.32
Aliphatic_Index 22.94118
Aromaticity 0.11765
Average_Rotatable_Bonds 4.47059
Charge_at_pH_7 -3.99328
Isoelectric_Point 3.87359
Number_of_Hydrogen_Bond_Acceptors 31
Number_of_Hydrogen_Bond_Donors 31
Topological_Polar_Surface_Area 1004.35000
X_logP_energy -8.82640
Interaction Information
Affinity KD=36 uM
Affinity_Assay NMR spectroscopy
PDB_ID None
Type Affinity ligand
Structure
Reference Information
Document_Type Research Articles
Title Topography for independent binding of alpha-helical and PPII-helical ligands to a peroxisomal SH3 domain.
Release_Year 2002
PMID 12453410
DOI 10.1016/s1097-2765(02)00749-9