PPIRE12798

Target Protein Information
Protein_Name Zinc finger protein DPF3
Protein_Sequence MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQLYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQEIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNRPGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEKASAFGCQA
Organism_Source Homo sapiens
Functional_Classification PHD finger proteins
Cellular_Localization Nucleus
Gene_Names DPF3
UniProt_ID Q92784
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name H3(1-18)K4me0 K14ac
Peptide_Sequence ARTKQTARKSTGGXAPRK
Peptide_Length 18
Peptide_SMILES C[C@H](N)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@H](C(=O)N[C@@H](C)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CO)C(=O)N[C@H](C(=O)NCC(=O)NCC(=O)NCC(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](CCCCN)C(=O)O)[C@@H](C)O)[C@@H](C)O)[C@@H](C)O
Chemical_Modification X14=Nepsilon-acetyllysine
Cyclization_Method None
Linear/Cyclic Linear
N-terminal_Modification Free
C-terminal_Modification Free
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 1871.13
Aliphatic_Index 16.66667
Aromaticity 0.00000
Average_Rotatable_Bonds 3.61111
Charge_at_pH_7 5.99709
Isoelectric_Point 12.81970
Number_of_Hydrogen_Bond_Acceptors 30
Number_of_Hydrogen_Bond_Donors 35
Topological_Polar_Surface_Area 937.00000
X_logP_energy -15.32299
Interaction Information
Affinity KD=7.8 uM
Affinity_Assay Isothermal titration calorimetry
PDB_ID None
Type Affinity ligand
Structure
Reference Information
Document_Type Research Articles
Title Identification of H3K4me1-associated proteins at mammalian enhancers.
Release_Year 2017
PMID 29255264
DOI 10.1038/s41588-017-0015-6