PPIRE16518

Target Protein Information
Protein_Name Envelope glycoprotein D
Protein_Sequence MGGAAARLGAVILFVVIVGLHGVRGKYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFETAGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAGWHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGTVAPQIPPNWHIPSIQDAATPYHPPATPNNMGLIAGAVGGSLLAALVICGIVYWMRRRTQKAPKRIRLPHIREDDQPSSHQPLFY
Organism_Source Human herpesvirus 1 (strain F)
Functional_Classification viral glycoproteins
Cellular_Localization Plasma membrane
Gene_Names gD
UniProt_ID Q05059
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name LKMADPNRFKGKDL
Peptide_Sequence LKMADPNRFKGKDL
Peptide_Length 14
Peptide_SMILES CSCC[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@@H](N)CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@@H](CC(=O)O)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCCNC(=N)N)C(=O)N[C@@H](Cc1ccccc1)C(=O)N[C@@H](CCCCN)C(=O)NCC(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CC(C)C)C(=O)O
Chemical_Modification None
Cyclization_Method None
Linear/Cyclic Linear
N-terminal_Modification Free
C-terminal_Modification Free
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 1632.94
Aliphatic_Index 62.85714
Aromaticity 0.07143
Average_Rotatable_Bonds 4.07143
Charge_at_pH_7 1.99799
Isoelectric_Point 10.50060
Number_of_Hydrogen_Bond_Acceptors 23
Number_of_Hydrogen_Bond_Donors 23
Topological_Polar_Surface_Area 690.48000
X_logP_energy -5.57873
Interaction Information
Affinity EC50=25.9 pM
Affinity_Assay ELISA
PDB_ID None
Type Affinity ligand
Structure
Reference Information
Document_Type Research Articles
Title Synthesis solution structure analysis and antibody binding of cyclic epitope peptides from glycoprotein D of Herpes simplex virus type I
Release_Year 2003
PMID 14556904
DOI 10.1016/S0301-4622(03)00187-X