PPIPT01383

Target Protein Information
Protein_Name Protein Nef
Protein_Sequence MGKIWSKSSLVGWPEIRERMRRQTQEPAVEPAVGAGAASQDLANRGAITIRNTRDNNESIAWLEAQEEEEEVGFPVRPQVPLRPITYKQAFDLSFFLKDKGGLEGLVWSRKRQDILDLWMYHTQGILPDWHNYTPGPGIRYPVTFGWCFKLVPLSAEEVEEANEGDNNALLHPICQHGADDDHKEVLVWRFDSSLARRHVARELHPEFYKNC
Organism_Source Human immunodeficiency virus type 1 group N (isolate YBF30)
Functional_Classification Viral accessory protein
Cellular_Localization Cytoplasm
Gene_Names nef
UniProt_ID O91087
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name SEQID7
Peptide_Sequence WPSWLPXLPF
Peptide_Length 10
Peptide_SMILES CC(C)C[C@H](NC(=O)CNC(=O)[C@@H]1CCCN1C(=O)[C@H](CC(C)C)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](CO)NC(=O)[C@@H]1CCCN1C(=O)[C@@H](N)Cc1c[nH]c2ccccc12)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)O
Chemical_Modification None
Cyclization_Method None
Linear/Cyclic Cyclic
N-terminal_Modification Free
C-terminal_Modification Amide
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 1199.42
Aliphatic_Index 78.00000
Aromaticity 0.30000
Average_Rotatable_Bonds 2.70000
Charge_at_pH_7 -0.00202
Isoelectric_point 6.10000
Number_of_Hydrogen_Bond_Acceptors 12
Number_of_Hydrogen_Bond_Donors 11
Topological_Polar_Surface_Area 350.66000
X_logP_energy 1.68670
Interaction Information
Affinity IC50=1 uM
Affinity_Assay ELISA
PDB_ID None
Type Inhibitor
Structure
Reference Information
Document_Type Patent
Title NOVEL PEPTIDES AND THE BIOLOGICAL USE THEREOF
Release_Year 2009
Patent_ID US20090163410A1