PPIPT02323

Target Protein Information
Protein_Name Tumor necrosis factor receptor superfamily member 16
Protein_Sequence MGAGATGRAMDGPRLLLLLLLGVSLGGAKEACPTGLYTHSGECCKACNLGEGVAQPCGANQTVCEPCLDSVTFSDVVSATEPCKPCTECVGLQSMSAPCVEADDAVCRCAYGYYQDETTGRCEACRVCEAGSGLVFSCQDKQNTVCEECPDGTYSDEANHVDPCLPCTVCEDTERQLRECTRWADAECEEIPGRWITRSTPPEGSDSTAPSTQEPEAPPEQDLIASTVAGVVTTVMGSSQPVVTRGTTDNLIPVYCSILAAVVVGLVAYIAFKRWNSCKQNKQGANSRPVNQTPPPEGEKLHSDSGISVDSQSLHDQQPHTQTASGQALKGDGGLYSSLPPAKREEVEKLLNGSAGDTWRHLAGELGYQPEHIDSFTHEACPVRALLASWATQDSATLDALLAALRRIQRADLVESLCSESTATSPV
Organism_Source Homo sapiens
Functional_Classification Tumor necrosis factor receptor superfamily
Cellular_Localization Plasma membrane
Gene_Names NGFR
UniProt_ID P08138
Protein-Protein Interaction Networks
Peptide Basic Information
Peptide_Name BDNF-C1
Peptide_Sequence RGWDRRHWVSE
Peptide_Length 11
Peptide_SMILES CC(C)[C@H](NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)[C@H](Cc1c[nH]cn1)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CCCNC(=N)N)NC(=O)[C@H](CC(=O)O)NC(=O)[C@H](Cc1c[nH]c2ccccc12)NC(=O)CNC(=O)[C@@H](N)CCCNC(=N)N)C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)O
Chemical_Modification None
Cyclization_Method none
Linear/Cyclic Linear
N-terminal_Modification free
C-terminal_Modification free
Amino_Acid_Distribution
Peptide Physicochemical
Molecular_Weight 1483.61
Aliphatic_Index 26.36364
Aromaticity 0.18182
Average_Rotatable_Bonds 4.18182
Charge_at_pH_7 1.09111
Isoelectric_point 10.31041
Number_of_Hydrogen_Bond_Acceptors 19
Number_of_Hydrogen_Bond_Donors 27
Topological_Polar_Surface_Area 695.11000
X_logP_energy -5.93089
Interaction Information
Affinity KD=0.556 uM
Affinity_Assay Surface Plasmon Resonance
PDB_ID None
Type Agonist
Structure
Reference Information
Document_Type Patent
Title Neurotrophin-derived peptide sequences
Release_Year 2009
Patent_ID US20090074779A1